Publications > publications from "DYFEA" researchers


Ar Gall E., Le Duff M., Sauriau P.-G., De Casamajor M.-N., Gevaert F., Poisson E., Hacquebart P., Joncourt Y., Barillé A.-L., Buchet R., Bréret M., Miossec L., 2016. Implementation of a new index to assess intertidal seaweed communities as bioindicators for the European Water Framework Directory. Ecological Indicators 60, 162-173.

Bouvy, M., Got, P., Domaizon, I., Pagano, M., Leboulanger, C., Bouvier, C., Carré, C., Roques, C., Dupuy, C., 2016. Plankton communities in the five Iles Eparses (Western Indian Ocean) considered to be pristine ecosystems. Acta Oecologica 72, 9-20.

Catry, T., Lourenço, P.M., Lopes, R.J., Bocher, P., Carneiro, C., Alves, J.A., Delaporte, P., Bearhop, S., Piersma, T., Granadeiro, J.P., 2016. Use of stable isotope fingerprints to assign wintering origin and trace shorebird movements along the East Atlantic Flyway. Basic and Applied Ecology 17, 177-187.

Dessier, A., Dupuy, C., Trancart, T., Audras, A., Bustamante, P., Gérard, C., 2016. Low diversity of helminth parasites in Sardina pilchardus and Engraulis encrasicolus (Clupeidae) from the Bay of Biscay. Marine and Freshwater Research, .

Dupuy, C., Pagano, M., Got, P., Domaizon, I., Chappuis, A., Marchessaux, G., Bouvy, M., 2016. Trophic relationships between metazooplankton communities and their plankton food sources in the Iles Eparses (Western Indian Ocean). Marine Environmental Research 116, 18-31.

Lavaud, J., Six, C., Campbell, D.A., 2016. Photosystem II repair in marine diatoms with contrasting photophysiologies. Photosynthesis Research 127, 189-199.

Lebreton, B., Beseres Pollack, J., Blomberg, B., Palmer, T.A., Adams, L., Guillou, G., Montagna, P.A., 2016. Origin, composition and quality of suspended particulate organic matter in relation to freshwater inflow in a South Texas estuary. Estuarine, Coastal and Shelf Science 170, 70-82.

Liénart, C., Feunteun, E., Miller, M.J., Aoyama, J., Mortillaro, J.M., Hubas, C., Kuroki, M., Watanabe, S., Dupuy, C., Carpentier, A., Otake, T., Tsukamoto, K., Meziane, T., 2016. Geographic variation in stable isotopic and fatty acid composition of anguilliform leptocephali and particulate organic matter in the South Pacific. Marine Ecology Progress Series 544, 225-241.

Sow, M.M., Majdi, N., Muylaert, K., Tackx, M., Julien, F., Probst, J.L., Mialet, B., Sutra, C., Probst, A., Thébault, J.M., Kenarlikdjian, M., Gérino, M., 2016. Retention of nutrients, suspended particulate matter and phytoplankton in a pondage associated with a run-of-the-river type hydroelectric power plant. Ecohydrology 9, 229-237.


Babin, M., Bélanger, S., Ellingsen, I., Forest, A., Le Fouest, V., Lacour, T., Ardyna, M., Slagstad, D., 2015. Estimation of primary production in the Arctic Ocean using ocean colour remote sensing and coupled physical-biological models: Strengths, limitations and how they compare. Progress in Oceanography 139, 197-220.

Badawy H., Brunellière J., Veryaskina M., Brotons G., Sablé S., Lanneluc I., Lambert K., Marmey P., Milsted A., Cutright T., Nourry A., Mouget J.L., Pasetto P., 2015. Assessing the antimicrobial activity of polyisoprene based surfaces. International Journal of Molecular Sciences 16, 4392-4415.

Barnett A., Méléder V., Blommaert L., Lepetit B., Gaudin P., Vyverman W., Sabbe K., Dupuy C., Lavaud J., 2015. Growth form defines physiological photoprotective capacity in intertidal benthic diatoms. ISME Journal 9, 32-45.

Ben Henda Y., Laamari M., Lanneluc I., Travers M.-A., Agogué H., Arnaudin I., Bridiau N., Maugard T., Piot J.-M., Sannier F., Bordenave-Juchereau S., 2015. Di and tripeptides from marine sources can target adipogenic process and contribute to decrease adipocyte number and functions. Journal of Functional Foods 17, 1-10.

Chaalali, A., Saint-Béat, B., Lassalle, G., Le Loc’h, F., Tecchio, S., Safi, G., Savenkoff, C., Lobry, J., Niquil, N., 2015. A new modeling approach to define marine ecosystems food-web status with uncertainty assessment. Progress in Oceanography 135, 37-47.

Chouvelon T., Violamer L., Dessier A., Bustamante P., Mornet F., Pignon-Mussaud C., Dupuy, C., 2015. Small pelagic fish feeding patterns in relation to food resource variability: an isotopic investigation for Sardina pilchardus and Engraulis encrasicolus from the Bay of Biscay (north-east Atlantic). Marine Biology 162, 15-37.

Doghri I., Rodrigues S., Bazire A., Dufour A., Akbar D., Sopena V., Sablé S., Lanneluc I., 2015. Marine bacteria from the French Atlantic coast displaying high forming-biofilm abilities and different biofilm 3D architectures. BMC Microbiology 15, 231.

Drumm D.T., Jourde J., Bocher P., 2015. A new species of the genus Monokalliapseudes (Crustacea: Tanaidacea: Kalliapseudidae) from French Guiana. Proceedings of the Biological Society of Washington 128, 86-97.

Dupuy, C., Nguyen Thanh, H., Mizrahi, D., Jourde, J., Bréret, M., Agogué, H., Beaugeard, L., Bocher, P., 2015. Structure and functional characteristics of the meiofauna community in highly unstable intertidal mudbanks in Suriname and French Guiana (North Atlantic coast of South America). Continental Shelf Research 110, 39-47.

Faure, D., Bonin, P., Duran, R.,(The Microbial Ecology EC2CO consortium Sablé S. ) 2015. Environmental microbiology as a mosaic of explored ecosystems and issues. Environ Sci Pollut Res 22, 13577-13598.

Feunteun E., Miller M.J., Carpentier A., Aoyama J., Dupuy C., Kuroki M., Pagano M., Réveillac E., Sellos D., Watanabe S., Tsukamoto K., Otake,T., 2015. Stable isotopic composition of anguilliform leptocephali and other food web components from west of the Mascarene Plateau. Progress in Oceanography 137, 69-83.

Ganthy F., Soissons L., Sauriau P.G., Verney R., Sottolichio A., 2015. Effects of short flexible seagrass Zostera noltei on flow, erosion and deposition processes determined using flume experiments. Sedimentology 62, 997-1023.

Germain N., Hartmann H.J., Fernández-Rivera Melo F.J., Reyes-Bonilla H., 2015. Ornamental reef fish fisheries: New indicators of sustainability and human development at a coastal community level. Ocean and Coastal Management 104, 136-149.

Guesnet, V., Lassalle, G., Chaalali, A., Kearney, K., Saint-Béat, B., Karimi, B., Grami, B., Tecchio, S., Niquil, N., Lobry, J., 2015. Incorporating food-web parameter uncertainty into Ecopath-derived ecological network indicators. Ecological Modelling 313, 29-40.

Hugoni M., Agogué H., Taib N., Domaizon I. Moné A., Galand P. E., Bronner G., Debroas D., Marie I., 2015. Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea. Microbial Ecology 70, 473-483.

Hugoni M., Domaizon I., Taib N., Biderre-Petit C., Agogué H., Galand P.E., Debroas D., Mary I., 2015. Temporal dynamics of active Archaea in oxygen-depleted zones of two deep lakes. Environmental Microbiology Reports 7, 321-329.

Hutchison J., Philipp D.P.,Claussen J.E. Aburto-Oropeza O., Carrasquilla-Henao M., Castellanos-Galindo G.A., Costa M.T., Daneshgar P.D., Hartmann H.J., Juanes F., Khan M.N., Knowles L., Knudsen E., Lee S.L., Murchie K.J., Tiedemann J., zu Ermgassen P., Spalding M. 2015. Building an expert-judgement based model of mangrove fisheries. In: Murchie K.J., Daneshgar P. P. (eds), Mangroves as Fish Habitat. American Fisheries Society. Bethesda, MD, USA: p. 17 – 42. ISBN-13: 978-1-934874-42-4.

Jauffrais, T., Drouet, S., Turpin, V., Méléder, V., Jesus, B., Cognie, B., Raimbault, P., Cosson, R.P., Decottignies, P., Martin-Jézéquel, V., 2015. Growth and biochemical composition of a microphytobenthic diatom (Entomoneis paludosa) exposed to shorebird (Calidris alpina) droppings. Journal of Experimental Marine Biology and Ecology 469, 83-92.

Jourde, J., Sampaio, L., Barnich, R., Bonifácio, P., Labrune, C., Quintino, V., Sauriau, P.-G., 2015. Malmgrenia louiseae sp. nov., a new scale worm species (Polychaeta: Polynoidae) from southern Europe with a key to European Malmgrenia species. Journal of the Marine Biological Association of the United Kingdom 95, 947-952.

Juneau P., Barnett A., Méléder V., Dupuy C., Lavaud J., 2015. Combined effect of high light and high salinity on the regulation of photosynthesis in three diatom species belonging to the main growth forms of intertidal flat inhabiting microphytobenthos. Journal of Experimental Marine Biology and Ecology 463, 95-104.

Lanneluc I., Langumier M., Sabot R., Jeannin M., Refait P., Sablé S., 2015. On the bacterial communities associated with the corrosion product layer during the early stages of marine corrosion of carbon steel. International Biodeterioration and Biodegradation 99, 55-65.

Laviale, M., Barnett, A., Ezequiel, J., Lepetit, B., Frankenbach, S., Méléder, V., Serôdio, J., Lavaud, J., 2015. Response of intertidal benthic microalgal biofilms to a coupled light-temperature stress: Evidence for latitudinal adaptation along the Atlantic coast of Southern Europe. Environmental Microbiology, 17, 3662-3677

Le Fouest V., Manizza M., Tremblay B., and Babin M., 2015. Modelling the impact of riverine DON removal by marine bacterioplankton on primary production in the Arctic Ocean, Biogeosciences, 12, 3385-3402.

Le Fouest V., Chami M., Verney R., 2015. Analysis of riverine suspended particulate matter fluxes (Gulf of Lion, Mediterranean Sea) using a synergy of ocean color observations with a 3-D hydrodynamic sediment transport model, Journal of Geophysical Research C: Oceans, 120, 942–957.

Martin-Jézéquel, V., Calu, G., Candela, L., Amzil, Z., Jauffrais, T., Séchet, V., Weigel, P., 2015. Effects of Organic and Inorganic Nitrogen on the Growth and Production of Domoic Acid by Pseudo-nitzschia multiseries and P. australis (Bacillariophyceae) in Culture. Marine Drugs 13, 7055-7086.

Masbou, J., Point, D., Guillou, G., Sonke, J.E., Lebreton, B., Richard, P., 2015. Carbon Stable Isotope Analysis of Methylmercury Toxin in Biological Materials by Gas Chromatography Isotope Ratio Mass Spectrometry. Analytical Chemistry 87, 11732-11738.

Masclaux, H., Tortajada, S., Philippine, O., Robin, F.X., Dupuy, C., 2015. Planktonic food web structure and dynamic in freshwater marshes after a lock closing in early spring. Aquatic Sciences 77, 115-128.

Montanié, H., De Crignis, M.G., Lavaud, J., 2015. Viral impact on prokaryotic and microalgal activities in the microphytobenthic biofilm of an intertidal mudflat (French Atlantic coast). Frontiers in Microbiology 6, 1214.

Nguetseng R., Fliedner A., Knopf B., Lebreton B., Quack M., Rüdel H., 2015. Retrospective monitoring of mercury in fish from selected European freshwater and estuary sites. Chemosphere 134, 427-434.

Paar, M., Voronkov, A., Hop, H., Brey, T., Bartsch, I., Schwanitz, M., Wiencke, C., Lebreton, B., Asmus, R., Asmus, H., 2015. Temporal shift in biomass and production of macrozoobenthos in the macroalgal belt at Hansneset, Kongsfjorden, after 15 years. Polar Biology.

Robin, F., Meunier, F., Corre, F., Joyeux, E., Cayatte, M.-L., Delaporte, P., Lemesle, J.-C., Pineau, P., Bocher, P., 2015. Site and prey selection by wintering Black-tailed Godwit Limosa limosa islandica feeding on seagrass beds and bare mudflats on the central Atlantic coast of Franc. Revue d’Ecologie (Terre et Vie) 70, 134-147.

Saint-Béat, B., Baird, D., Asmus, H., Asmus, R., Bacher, C., Pacella, S.R., Johnson, G.A., David, V., Vézina, A.F., Niquil, N., 2015. Trophic networks: How do theories link ecosystem structure and functioning to stability properties? A review. Ecological Indicators 52, 458-471.

Sardenne, F., Ménard, F., Degroote, M., Fouché, E., Guillou, G., Lebreton, B., Hollanda, S.J., Bodin, N., 2015. Methods of lipid-normalization for multi-tissue stable isotope analyses in tropical tuna. Rapid Communications in Mass Spectrometry 29, 1253-1267.

Wagner, H., Jakob, T., Lavaud, J., Wilhelm, C., 2015. Photosystem II cycle activity and alternative electron transport in the diatom Phaeodactylum tricornutum under dynamic light conditions and nitrogen limitation. Photosynthesis Research, 1-11.

Yang A., Zhang X., Agogué H., Dupuy C., Gong J., 2015. Contrasting spatiotemporal patterns and environmental drivers of diversity and community structure of ammonia oxidizers, denitrifiers, and anammox bacteria in sediments of estuarine tidal flats. Annals of Microbiology 65, 879-890


Agogué H., Mallet C., Orvain F., De Crignis M., Mornet F., Dupuy C., 2014. Bacterial dynamics in a microphytobenthic biofilm: A tidal mesocosm approach. Journal of Sea Research 92, 36-45.

Barros F., Blanchet H., Hammerstrom K., Sauriau P.G., Oliver J., 2014. A framework for investigating general patterns of benthic β-diversity along estuaries. Estuarine, Coastal and Shelf Science 149, 223-231.

Blanchet H., Gouillieux B., Alizier S., Amouroux J.M., Bachelet G., Barillé A.L., Dauvin J.C., de Montaudouin X., Derolez V., Desroy N., Grall J., Grémare A., Hacquebart P., Jourde J., Labrune C., Lavesque N., Meirland A., Nebout T., Olivier F., Pelaprat C., Ruellet T., Sauriau P.G., Thorin S., 2014. Multiscale patterns in the diversity and organization of benthic intertidal fauna among French Atlantic estuaries. Journal of Sea Research 90, 95-110.

Bocher P., Robin F., Kojadinovic J., Delaporte P., Rousseau P., Dupuy C., Bustamante P., 2014. Trophic resource partitioning within a shorebird community feeding on intertidal mudflat habitats. Journal of Sea Research 92,115-124.

Carpentier A., Como S., Dupuy C., Lefrançois C., Feunteun E., 2014. Feeding ecology of Liza spp. in a tidal flat: Evidence of the importance of primary production (biofilm) and associated meiofauna. Journal of Sea Research 92, 86-91.

Chouvelon T., Chappuis A., Bustamante P., Lefebvre S., Mornet F., Guillou G., Violamer L., Dupuy C., 2014. Trophic ecology of European sardine Sardina pilchardus and European anchovy Engraulis encrasicolus in the Bay of Biscay (north-east Atlantic) inferred from δ13C and δ15N values of fish and identified mesozooplanktonic organisms. Journal of Sea Research 85, 277-291.

Como S., Lefrancois C., Maggi E., Antognarelli F., Dupuy C., 2014. Behavioral responses of juvenile golden gray mullet Liza aurata to changes in coastal temperatures and consequences for benthic food resources. Journal of Sea Research 92, 66-73.

Dubois S., Blanchet H., Garcia A., Massé M., Galois R., Grémare A., Charlier K., Guillou G., Richard P., Savoye N., 2014. Trophic resource use by macrozoobenthic primary consumers within a semi-enclosed coastal ecosystem: Stable isotope and fatty acid assessment. Journal of Sea Research 88, 87-99.

Dupuy C., Mallet C., Guizien K., Montanié H., Bréret M., Mornet F., Fontaine C., Nérot C., Orvain F., 2014. Sequential resuspension of biofilm components (viruses, prokaryotes and protists) as measured by erodimetry experiments in the Brouage mudflat (French Atlantic coast). Journal of Sea Research 92, 56-65.

Fargier L., Hartmann H.J., Molina-Ureña H., 2014. Marine Areas of Responsible Fishing: a path toward small-scale fisheries co-management in Costa Rica? Perspectives from Golfo Dulce. in: Amezcua-Martínez F (Ed) "Fisheries Management of Mexican and Central American Estuaries”, Estuaries of the World, Springer Verlag, Dordrecht 2014: p. 155-179

Giovagnetti V., Flori S., Tramontano F., Lavaud J., Brunet C., 2014. The velocity of light intensity increase modulates the photoprotective response in coastal diatoms. PLoS ONE 9.

Graba M., Sauvage S., Majdi N., Mialet B., Moulin F.Y., Urrea G., Buffan-Dubau E., Tackx M., Sabater S., Sanchez-Pérez J.M., 2014. Modelling epilithic biofilms combining hydrodynamics, invertebrate grazing and algal traits. Freshwater Biology. DOI: 10.1111/fwb.12341

Guizien K., Dupuy C., Ory P., Montanié H., Hartmann H., Chatelain M., Karpytchev M., 2014. Microorganism dynamics during a rising tide: Disentangling effects of resuspension and mixing with offshore waters above an intertidal mudflat. Journal of Marine Systems 129, 178-188.

Hlaili, A.S., Niquil, N., Legendre, L., 2014. Planktonic food webs revisited: Reanalysis of results from the linear inverse approach. Progress in Oceanography 120, 216-229.

Korsman J.C., Schipper A.M., De Hoop L., Mialet B., Maris T., Tackx M.L.M., Hendriks A.J., 2014. Modeling the impacts of multiple environmental stress factors on estuarine copepod populations. Environmental Science and Technology 48, 5709-5717.

Lassalle G., Bourdaud P., Saint-Béat B., Rochette S., Niquil N., 2014. A toolbox to evaluate data reliability for whole-ecosystem models: Application on the Bay of Biscay continental shelf food-web model. Ecological Modelling 285, 13-21.

Lassalle G., Chouvelon T., Bustamante P., Niquil N., 2014. An assessment of the trophic structure of the Bay of Biscay continental shelf food web: Comparing estimates derived from an ecosystem model and isotopic data. Progress in Oceanography 120, 205-215.

Lassalle G., Nelva Pasqual J.-S., Boët P., Rochet M.-J., Trenkel V.M., Niquil N., 2014. Combining quantitative and qualitative models to identify functional groups for monitoring changes in the Bay of Biscay continental shelf exploited foodweb. ICES Journal of Marine Science 71, 105-117.

Lavergne C., Beaugeard L., Dupuy C., Courties C., Agogué H., 2014. An efficient and rapid method for the enumeration of heterotrophic prokaryotes in coastal sediments by flow cytometry. Journal of Microbiological Methods 105, 31-38.

Lucia M., Bocher P., Chambosse M., Delaporte P., Bustamante P., 2014. Trace element accumulation in relation to trophic niches of shorebirds using intertidal mudflats. Journal of Sea Research 92, 134-143.

Mallet C., Agogué H., Bonnemoy F., Guizien K., Orvain F., Dupuy C., 2014. Structures of benthic prokaryotic communities and their hydrolytic enzyme activities resuspended from samples of intertidal mudflats: An experimental approach. Journal of Sea Research 92, 158-169.

Montanié H., Ory P., Orvain F., Delmas D., Dupuy C., Hartmann H.J. 2014. Microbial interactions in marine water amended by eroded benthic biofilm: A case study from an intertidal mudflat. Journal of Sea Research 92, 74-85.

Orvain F., De Crignis M., Guizien K., Lefebvre S., Mallet C., Takahashi E., Dupuy C., 2014. Tidal and seasonal effects on the short-term temporal patterns of bacteria, microphytobenthos and exopolymers in natural intertidal biofilms (Brouage, France). Journal of Sea Research 92, 6-18.

Orvain F., Guizien K., Lefebvre S., Bréret M., Dupuy C., 2014. Relevance of macrozoobenthic grazers to understand the dynamic behaviour of sediment erodibility and microphytobenthos resuspension in sunny summer conditions. Journal of Sea Research 92, 46-55.

Pierre G., Zhao J.-M., Orvain F., Dupuy C., Klein G.L., Graber M., Maugard T., 2014. Seasonal dynamics of extracellular polymeric substances (EPS) in surface sediments of a diatom-dominated intertidal mudflat (Marennes–Oléron, France). Journal of Sea Research 92, 26-35.

Quaintenne G., Bocher P., Ponsero A., Caillot E., Feunteun E., 2014. Contrasting Benthos Communities and Prey Selection by Red Knot Calidris canutus in Three Nearby Bays on the Channel Coast. Ardea 101, 87-98.

Rasconi, S., Grami, B., Niquil, N., Jobard, M., Sime-Ngando, T., 2014. Parasitic chytrids sustain zooplankton growth during inedible algal bloom. Frontiers in Microbiology 5.

Saint-Béat B., Dupuy C., Agogué H., Carpentier A., Chalumeau J., Como S., David V., De Crignis M., Duchêne J.C., Fontaine C., Feunteun E., Guizien K., Hartmann H., Lavaud J., Lefebvre S., Lefrançois C., Mallet C., Montanié H., Mouget J.L., Orvain F., Ory P., Pascal P.Y., Radenac G., Richard P., Vézina A.F., Niquil N., 2014. How does the resuspension of the biofilm alter the functioning of the benthos-pelagos coupled food web of a bare mudflat in Marennes-Oléron Bay (NE Atlantic)? Journal of Sea Research 92, 144-157.

Tambadou F., Lanneluc I., Sablé S., Klein G.L., Doghri I., Sopéna V., Didelot S., Barthélémy C., Thiéry V., Chevrot R., 2014. Novel nonribosomal peptide synthetase (NRPS) genes sequenced from intertidal mudflat bacteria. FEMS Microbiology Letters 357, 123-130.

Zhang X., Agogué H., Dupuy C., Gong J., 2014. Relative Abundance of Ammonia Oxidizers, Denitrifiers, and Anammox Bacteria in Sediments of Hypernutrified Estuarine Tidal Flats and in Relation to Environmental Conditions. CLEAN - Soil, Air, Water, 2 (6), 815-823.


Batifoulier F., Lazure P., Velo-Suarez L., Maurer D., Bonneton P., Charria G., Dupuy C., Gentien P., 2013. Distribution of Dinophysis species in the Bay of Biscay and possible transport pathways to Arcachon Bay. Journal of Marine Systems 109-110, S273-S283.

Bocher P., Robin F., Deceuninck B., Caillot E., 2013. Distribution, phenology and long-term population trends in Blacktailed Godwits Limosa limosa wintering in coastal France. Acta Ornithologica 48, 141-150.

Bocher P., Robin F., Meunier F., Delaporte P., Simon-Bouhet B., 2013. Origins and Age Structure of Black-Tailed Godwits Limosa limosa on the Central Atlantic Coast of France. Ardeola 60, 225-243.

Chaigne, A., Authier, M., Richard, P., Cherel, Y., Guinet, C., 2013. Shift in foraging grounds and diet broadening during ontogeny in southern elephant seals from Kerguelen Islands. Marine Biology 160, 977-986.

Cherel, Y., Jaeger, A., Alderman, R., Jaquemet, S., Richard, P., Wanless, R.M., Phillips, R.A., Thompson, D.R., 2013. A comprehensive isotopic investigation of habitat preferences in nonbreeding albatrosses from the Southern Ocean. Ecography 36, 277-286.

Hugoni M., Taib N., Debroas D., Domaizon I., Dufournel I.J., Bronner G., Salter I., Agogué H., Mary I., Galand P.E., 2013. Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters. Proceedings of the National Academy of Sciences of the United States of America 110, 6004-6009.

Jassey V.E.J., Meyer C., Dupuy C., Bernard N., Mitchell E.A.D., Toussaint M.L., Metian M., Chatelain A.P., Gilbert D., 2013. To What Extent Do Food Preferences Explain the Trophic Position of Heterotrophic and Mixotrophic Microbial Consumers in a Sphagnum Peatland? Microbial Ecology 66, 571-580.

Jourde, J., Sauriau, P.-G., Guenneteau, S., Caillot, E., 2013. First record of Grandidierella japonica Stephensen, 1938 (Amphipoda: Aoridae) from mainland Europe. BioInvasions Record 2, 51-55.

Kientz B., Agogué H., Lavergne C., Marié P., Rosenfeld E., 2013. Isolation and distribution of iridescent Cellulophaga and other iridescent marine bacteria from the Charente-Maritime coast, French Atlantic. Systematic and Applied Microbiology 36, 244-251.

Lassalle G., Lobry J., Le Loc’h F., Mackinson S., Sanchez F., Tomczak M.T., Niquil,N., 2013. Ecosystem status and functioning: Searching for rules of thumb using an intersite comparison of food-web models of Northeast Atlantic continental shelves. ICES Journal of Marine Science 70, 135-149.

Lavaud J., Lepetit B., 2013. An explanation for the inter-species variability of the photoprotective non-photochemical chlorophyll fluorescence quenching in diatoms. Biochimica et Biophysica Acta - Bioenergetics 1827, 294-302.

Le Fouest, V., Babin, M., Tremblay, J.E., 2013. The fate of riverine nutrients on Arctic shelves. Biogeosciences 10, 3661-3677.

Le Fouest, V., Zakardjian, B., Xie, H., Raimbault, P., Joux, F., Babin, M., 2013. Modeling plankton ecosystem functioning and nitrogen fluxes in the oligotrophic waters of the Beaufort Sea, Arctic Ocean: A focus on light-driven processes. Biogeosciences 10, 4785-4800.

Lebreton B., Richard P., Guillou G., Blanchard G.F., 2013. Trophic shift in young-of-the-year Mugilidae during salt-marsh colonization. Journal of Fish Biology 82, 1297-1307.

Legendre L., Niquil N., 2013. Large-scale regional comparisons of ecosystem processes: Methods and approaches. Journal of Marine Systems 109-110, 4-21.

Lepetit B., Sturm S., Rogato A., Gruber A., Sachse M., Falciatore A., Kroth P.G., Lavaud J., 2013. High light acclimation in the secondary plastids containing diatom Phaeodactylum tricornutum is triggered by the redox state of the plastoquinone pool. Plant Physiology 161, 853-865.

Marquise N., Harford P.J., Chevallier F., Roisnel T., Dorcet,V., Gagez A.L., Sablé S., Picot L., Thiéry V., Wheatley A.E.H., Gros P.C., Mongin F., 2013. Synthesis of azafluorenones and related compounds using deprotocupration-aroylation followed by intramolecular direct arylation. Tetrahedron 69, 10123-10133.

Méléder V., Laviale M., Jesus B., Mouget J.L., Lavaud J., Kazemipour F., Launeau P., Barillé L., 2013. In vivo estimation of pigment composition and optical absorption cross-section by spectroradiometry in four aquatic photosynthetic micro-organisms. Journal of Photochemistry and Photobiology B: Biology 129, 115-124.

Mialet B., Majdi N., Tackx M., Azémar F., Buffan-Dubau E., 2013. Selective Feeding of Bdelloid Rotifers in River Biofilms. PLoS ONE 8, e75352.

Pacella S.R., Lebreton B., Richard P., Phillips D., DeWitt T.H., Niquil N., 2013. Incorporation of diet information derived from Bayesian stable isotope mixing models into mass-balanced marine ecosystem models: A case study from the Marennes-Oléron Estuary, France. Ecological Modelling 267, 127-137.

Raimonet, M., Guillou, G., Mornet, F., Richard, P., 2013. Macroalgae δ15N values in well-mixed estuaries: Indicator of anthropogenic nitrogen input or macroalgae metabolism? Estuarine, Coastal and Shelf Science 119, 126-138.

Robin F., Piersma T., Meunier F., Bocher P., 2013. Expansion into an herbivorous niche by a customary carnivore : Black -tailed god wits feeding on rhizomes of zostera at a newly established wintering site. Condor 115, 340-347.

Rombouts I., Beaugrand G., Fizzala X., Gaill F., Greenstreet S.P.R., Lamare S., Le Loc’H F., McQuatters-Gollop A., Mialet B., Niquil,N., Percelay J., Renaud F., Rossberg A.G., Féral J.P., 2013. Food web indicators under the Marine Strategy Framework Directive: From complexity to simplicity? Ecological Indicators 29, 246-254.

Saint-Béat B., Dupuy C., Bocher P., Chalumeau J., De Crignis M., Fontaine C., Guizien K., Lavaud J., Lefebvre S., Montanié H., Mouget J.L., Orvain F., Pascal P.Y., Quaintenne G., Radenac G., Richard P., Robin F., Vézina A.F., Niquil N., 2013. Key Features of Intertidal Food Webs That Support Migratory Shorebirds. PLoS ONE 8.

Saint-Béat B., Vézina A.F., Asmus R., Asmus H., Niquil N., 2013. The mean function provides robustness to linear inverse modelling flow estimation in food webs: A comparison of functions derived from statistics and ecological theories. Ecological Modelling 258, 53-64.

Serôdio J., Ezequiel J., Frommlet J., Laviale M., Lavaud J., 2013. A method for the rapid generation of nonsequential light-response curves of chlorophyll fluorescence. Plant Physiology 163, 1089-1102.

Sturm S., Engelken J., Gruber A., Vugrinec S., G Kroth P., Adamska I., Lavaud J., 2013. A novel type of light-harvesting antenna protein of red algal origin in algae with secondary plastids. BMC Evolutionary Biology 13.

Tekwani N., Majdi N., Mialet B., Tornés E., Urrea-Clos G., Buffan-Dubau E., Sabater S., Tackx M., 2013. Contribution of epilithic diatoms to benthic-pelagic coupling in a temperate river. Aquatic Microbial Ecology 69, 47-57.


Asmus, R., Asmus, H., Baird, D., Niquil, N., 2012. Preface Special Issue Estuarine systems: changes and challenges. Estuarine, Coastal and Shelf Science 108, 1-2.

Authier, M., Dragon, A.C., Richard, P., Cherel, Y., Guinet, C., 2012. O’ mother where wert thou? Maternal strategies in the southern elephant seal: a stable isotope investigation. Proceedings. Biological sciences / The Royal Society 279, 2681-2690.

Bocher, P., Quaintenne, G., Delaporte, P., Goulevant, C., Deceuninck, B., Caillot, E., 2012. Distribution, phenology and long term trends of Red Knots Calidris canutus in France. Wader Study Group Bulletin 119, 17-25.

Bocher, P., Quaintenne, G., Robin, F., Doumeret, A., Delaporte, P., 2012. Origins and age structure of Red Knot Calidris canutus staging and wintering on the Atlantic coast of France. Journal of Ornithology 153, 103-114.

Bouvy, M., Combe, M., Bettarel, Y., Dupuy, C., Rochelle-Newall, E., Charpy, L., 2012. Uncoupled viral and bacterial distributions in coral reef waters of Tuamotu Archipelago (French Polynesia). Marine Pollution Bulletin 65, 506-515.

Bouvy, M., Dupuy, C., Pagano, M., Barani, A., Charpy, L., 2012. Do human activities affect the picoplankton structure of the Ahe atoll lagoon (Tuamotu Archipelago, French Polynesia)? Marine Pollution Bulletin 65, 516-524.

Ceia, F.R., Phillips, R.A., Ramos, J.A., Cherel, Y., Vieira, R.P., Richard, P., Xavier, J.C., 2012. Short- and long-term consistency in the foraging niche of wandering albatrosses. Marine Biology 159, 1581-1591.

David, V., Ryckaert, M., Karpytchev, M., Bacher, C., Arnaudeau, V., Vidal, N., Maurer, D., Niquil, N., 2012. Spatial and long-term changes in the functional and structural phytoplankton communities along the French Atlantic coast. Estuarine, Coastal and Shelf Science 108, 37-51.

Domaizon, I., Lepère, C., Debroas, D., Bouvy, M., Ghiglione, J.F., Jacquet, S., Bettarel, Y., Bouvier, C., Torréton, J.P., Vidussi, F., Mostajir, B., Kirkham, A., Lefloch, E., Fouilland, E., Montanié, H., Bouvier, T., 2012. Short-term responses of unicellular planktonic eukaryotes to increases in temperature and UVB radiation. BMC Microbiology 12, 202.

Fournier, J., Dupuy, C., Bouvy, M., Couraudon-Réale, M., Charpy, L., Pouvreau, S., Le Moullac, G., Le Pennec, M., Cochard, J.C., 2012. Pearl oysters Pinctada margaritifera grazing on natural plankton in Ahe atoll lagoon (Tuamotu archipelago, French Polynesia). Marine Pollution Bulletin 65, 490-499.

Jassey, V.E.J., Shimano, S., Dupuy, C., Toussaint, M.L., Gilbert, D., 2012. Characterizing the Feeding Habits of the Testate Amoebae Hyalosphenia papilio and Nebela tincta along a Narrow " Fen-Bog" Gradient Using Digestive Vacuole Content and 13C and 15N Isotopic Analyses. Protist 163, 451-464.

Jourde, J., Alizier, S., Dancie, C., Dauvin, J.C., Desroy, N., Dubut, S., Gentil, F., Grall, J., Hanin, C., Lanshere, J., Thiébaut, E., 2012. First and repeated records of the tropical-temperate crab Asthenognathus atlanticus Monod, 1932 (Decapoda: Brachyura) in the eastern part of the bay of seine (eastern english channel, France). Cahiers de Biologie Marine 53, 525-532.

Kernaléguen, L., Cazelles, B., Arnould, J.P.Y., Richard, P., Guinet, C., Cherel, Y., 2012. Long-term species, sexual and individual variations in foraging strategies of fur seals revealed by stable isotopes in whiskers. PLoS ONE 7.

Lassalle, G., Gascuel, D., Le Loc’h, F., Lobry, J., Pierce, G.J., Ridoux, V., Santos, M.B., Spitz, J., Niquil, N., 2012. An ecosystem approach for the assessment of fisheries impacts on marine top predators: the Bay of Biscay case study. ICES Journal of Marine Science: Journal du Conseil 69, 925-938.

Lavaud, J., Materna, A.C., Sturm, S., Vugrinec, S., Kroth, P.G., 2012. Silencing of the violaxanthin de-epoxidase gene in the diatom Phaeodactylum tricornutum reduces diatoxanthin synthesis and non-photochemical quenching. PLoS ONE 7.

Lebreton, B., Richard, P., Galois, R., Radenac, G., Brahmia, A., Colli, G., Grouazel, M., André, C., Guillou, G., Blanchard, G.F., 2012. Food sources used by sediment meiofauna in an intertidal Zostera noltii seagrass bed: A seasonal stable isotope study. Marine Biology 159, 1537-1550.

Lucia, M., Bocher, P., Cosson, R.P., Churlaud, C., Bustamante, P., 2012. Evidence of species-specific detoxification processes for trace elements in shorebirds. Ecotoxicology 21, 2349-2362.

Lucia, M., Bocher, P., Cosson, R.P., Churlaud, C., Robin, F., Bustamante, P., 2012. Insight on trace element detoxification in the Black-tailed Godwit (Limosa limosa) through genetic, enzymatic and metallothionein analyses. Science of the Total Environment 423, 73-83.

Majdi, N., Mialet, B., Boyer, S., Tackx, M., Leflaive, J., Boulêtreau, S., Ten-Hage, L., Julien, F., Fernandez, R., Buffan-Dubau, E., 2012. The relationship between epilithic biofilm stability and its associated meiofauna under two patterns of flood disturbance. Freshwater Science 31, 38-50.

Marrou, L., Marencic, H., Niquil, N., 2012. Preface B. From Venice to Wadden: A brief review of " transitional water systems" as World Heritage Sites. Estuarine, Coastal and Shelf Science 108, 3-6.

Meissner, A.M., MacLeod, C.D., Richard, P., Ridoux, V., Pierce, G., 2012. Feeding ecology of striped dolphins, Stenella coeruleoalba, in the north-western Mediterranean Sea based on stable isotope analyses. Journal of the Marine Biological Association of the United Kingdom 92, 1677-1687.

Modéran, J., David, V., Bouvais, P., Richard, P., Fichet, D., 2012. Organic matter exploitation in a highly turbid environment: Planktonic food web in the Charente estuary, France. Estuarine, Coastal and Shelf Science 98, 126-137.

Niquil, N., Chaumillon, E., Johnson, G.A., Bertin, X., Grami, B., David, V., Bacher, C., Asmus, H., Baird, D., Asmus, R., 2012. The effect of physical drivers on ecosystem indices derived from ecological network analysis: Comparison across estuarine ecosystems. Estuarine, Coastal and Shelf Science 108, 132-143.

Orvain, F., Le Hir, P., Sauriau, P.G., Lefebvre, S., 2012. Modelling the effects of macrofauna on sediment transport and bed elevation: Application over a cross-shore mudflat profile and model validation. Estuarine, Coastal and Shelf Science 108, 64-75.

Pagano, M., Sagarra, P.-B., Champalbert, G., Bouvy, M., Dupuy, C., Thomas, Y., Charpy, L., 2012. Metazooplankton communities in the Ahe atoll lagoon (Tuamotu Archipelago, French Polynesia): Spatiotemporal variations and trophic relationships. Marine Pollution Bulletin 65, 538-548.

Pierre, G., Graber, M., Rafiliposon, B.A., Dupuy, C., Orvain, F., de Crignis, M., Maugard, T., 2012. Biochemical Composition and Changes of Extracellular Polysaccharides (ECPS) Produced during Microphytobenthic Biofilm Development (Marennes-Oléron, France). Microbial Ecology 63, 157-169.

Ramdine, G., Fichet, D., Louis, M., Lemoine, S., 2012. Polycyclic aromatic hydrocarbons (PAHs) in surface sediment and oysters (Crassostrea rhizophorae) from mangrove of Guadeloupe: Levels, bioavailability, and effects. Ecotoxicology and Environmental Safety 79, 80-89.

Rasconi, S., Niquil, N., Sime-Ngando, T., 2012. Phytoplankton chytridiomycosis: Community structure and infectivity of fungal parasites in aquatic ecosystems. Environmental Microbiology 14, 2151-2170.

Rzeznik-Orignac, J., Fichet, D., 2012. Experimental estimation of assimilation rates of meiofauna feeding on 14C-labelled benthic diatoms. Journal of Experimental Marine Biology and Ecology 432-433, 179-185.

Serôdio, J., Ezequiel, J., Barnett, A., Mouget, J., Méléder, V., Laviale, M., Lavaud, J., 2012. Efficiency of photoprotection in microphytobenthos: role of vertical migration and the xanthophyll cycle against photoinhibition. Aquatic Microbial Ecology 67, 161-175.

Sokołowski, A., Wołowicz, M., Asmus, H., Asmus, R., Carlier, A., Gasiunaité, Z., Grémare, A., Hummel, H., Lesutiené, J., Razinkovas, A., Renaud, P.E., Richard, P., Kedra, M., Lebreton, B., 2012. Is benthic food web structure related to diversity of marine macrobenthic communities? Estuarine, Coastal and Shelf Science 108, 76-86.

Tortajada, S., Niquil, N., Blanchet, H., Grami, B., Montanié, H., David, V., Glé, C., Saint-Béat, B., Johnson, G.A., Marquis, E., Del Amo, Y., Dubois, S., Vincent, D., Dupuy, C., Jude, F., Hartmann, H.J., Sautour, B., 2012. Network analysis of the planktonic food web during the spring bloom in a semi enclosed lagoon (Arcachon, SW France). Acta Oecologica 40, 40-50.

Witkowski, A., Sullivan, M.J., Bogaczewicz-Adamcza, B., Bak, M., Rhiel, E., Ribeiro, L., Richard, P., 2012. Morphology and distribution of a little known but widespread diatom (Bacillariophyceae), Navicula spartinetensis Sullivan et Reimer. Diatom Research 27, 43-51.


Agogué H, Lamy D, Neal PR, Sogin ML, Herndl GJ (2011) Water mass−specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing. Molecular ecology 20: 258−274

Baeta, A., Niquil, N., Marques, J.C., Patrício, J., 2011. Modelling the effects of eutrophication, mitigation measures and an extreme flood event on estuarine benthic food webs. Ecological Modelling 222, 1209-1221.

Bouvy M, Jacquet S, Domaizon I, Bettarel Y, Bouvier C, Montanié H, Mostajir B, Sime Ngando T, Torreton JP, Vidussi F, Bouvier T (2011) Trophic interactions between viruses, bacteria and nanoflagellates under various nutrient conditions and simulated climate change. Environmental Microbiology 13: 1842-1857

Bukaveckas, P.A., Barry, L.E., Beckwith, M.J., David, V., Lederer, B., 2011. Factors Determining the Location of the Chlorophyll Maximum and the Fate of Algal Production within the Tidal Freshwater James River. Estuaries and Coasts 34, 569-582.

Dupuy C, Talarmin A, Hartmann HJ, Delmas D, Courties C, Marquis E (2011) Community structure and grazing of the nano-microzooplankton on the continental shelf of the Bay of Biscay. Estuarine Coastal and Shelf Science 95: 1-13

Grami, B., Rasconi, S., Niquil, N., Jobard, M., Saint-Béat, B., Sime-Ngando, T., 2011. Functional effects of parasites on food web properties during the spring diatom bloom in lake pavin: A linear inverse modeling analysis. PLoS ONE 6.

Lassalle G, Lobry J, Le Loc’h F, Bustamante P, Certain G, Delmas D, Dupuy C, Hily C, Labry C, Le Pape O, Marquis E, Petitgas P, Pusineri C, Ridoux V, Spitz J, Niquil N (2011) Lower trophic levels and detrital biomass controlled the Bay of Biscay continental shelf food web: implications for ecosystem management. 91: 561-575

Lebreton B, Richard P, Galois R, Radenac G, Pfléger C, Guillou G, Blanchard GF (2011) Trophic importance of microphytobenthos in an intertidal Zostera noltii seagrass bed : Evidence from stable isotope and fatty acid analyses. Estuarine Coastal and Shelf Science 92: 140-153

Lebreton B, Richard P, Parlier EP, Guillou G, Blanchard GF (2011) Trophic ecology of mullets in an European salt marsh : A stable isotope study. Estuarine Coastal and Shelf Science 91: 502-510

Lefebvre S, Mouget JL, Lavaud J (2011) Duration of rapid light curves for determining the photosynthetic activity of microphytobenthos biofilm in situ. Aquatic Botany 95:1-8

Marquis E, Niquil N, Dupuy C (2011). Does the study of nano-microzooplankton community size structure effectively define their dynamics ? Investigation in the Bay of Biscay (France). Journal of Plankton research 33: 1104-1118.

Marquis E, Niquil N, Vézina A, Petitgas P, Dupuy C (2011) Influence of the planktonic food web structure on the system capacity to support pelagic productions: an inverse analysis approach. ICES Journal of Marine Science 68: 803-812.

Morin, N., Lanneluc, I., Connil, N., Cottenceau, M., Pons, A.M., Sablé, S., 2011. Mechanism of bactericidal activity of microcin L in Escherichia coli and Salmonella enterica. Antimicrobial Agents and Chemotherapy 55, 997-1007.

Niquil, N., Kagami, M., Urabe, J., Christaki, U., Viscogliosi, E., Sime-Ngando, T., 2011. Potential role of fungi in plankton food web functioning and stability: A simulation analysis based on Lake Biwa inverse model. Hydrobiologia 659, 65-79.

Ory P, Palesse S, Delmas D, Montanié H (2011). In situ structuration of virioplankton through bacterial exoenzymatic activity: interaction with phytoplankton. Aquatic microbial ecology 64: 233-252

Quaintenne G, van Gils JA, Bocher P, Dekinga A, Piersma T (2011) Scaling up ideals to freedom: are densities of red knots across Western Europe consistent with IFD? Proceedings of the Royal Society Series B. 278: 2728-2736 .

Refait, P., Nguyen, D.D., Jeannin, M., Sable, S., Langumier, M., Sabot, R., 2011. Electrochemical formation of green rusts in deaerated seawater-like solutions. Electrochimica Acta 56, 6481-6488.

Serodio J, Lavaud J (2011) A model for describing the light response of the nonphotochemical quenching of chlorophyll fluorescence. Photosynthesis Research 108: 61-76.

Sime-Ngando, T., Niquil, N., 2011. Editorial: ’Disregarded’ microbial diversity and ecological potentials in aquatic systems: A new paradigm shift ahead. Hydrobiologia 659, 1-4.

Tortajada S, David V, Brahmia A, Dupuy C, Laniesse T, Parinet B, Pouget F, Rousseau F, Simon-Bouhet B, Robin FX (2011) Variability of salt- and freshwater marsh characteristics on the west coast of France: a spatio-temporal assessment. Water Research 45: 4152-4168

Viain A, Corre F, Delaporte P, Joyeux E, Bocher P (2011) Numbers, diet and feeding methods of Common Shelduck Tadorna tadorna wintering in the estuarine bays of Aiguillon and Marennes-Oléron, western France. Wildfowl 61: 121–141


Allard J, Chaumillon E, Bertin X, Poirier C , Ganthy F (2010) Sedimentary record of environ-mental changes and human interferences in a macrotidal bay for the last millenaries: the Marennes-Oleron Bay (SW France). Bulletin de la Société Géologique de France 181: 151-169

Brunet C and Lavaud J (2010) Can the xanthophyll cycle help extract the essence of the microalgal functional response to a variable light environment ? Journal of Plankton Research 32: 1609-1617

Dupuy C, Rossignol L, Geslin E, Pascal PY (2010) Ammonia tepida: a hard-shelled foraminifera predator of mudflat at meio-macrofaunal metazoan. Journal of Foraminiferal Research 40: 305-331

Feutry P, Hartmann HJ, Casabonnet H, Umaña G (2010) Preliminary analysis of the fish species of the Pacific Central American Mangrove of Zancudo, Golfo Dulce, Costa Rica. Wetlands Ecology and Management 18: 637-650

Lavesque N., Bachelet G., Béguer M., Girardin M., Lepage M., Blanchet H., Sorbe J.-C., Modéran J., Sauriau P.-G., Auby I. (2010) Recent expansion of the oriental shrimp Palaemon macrodactylus (Crustacea: Decapoda) on the western coasts of France. Aquatic Invasions, 5 (Suppl. 1): 103-108

Modéran J, Bouvais P, David V, Le Noc S, Simon-Bouhet B, Niquil N, Miramand P, Fichet D (2010) Zooplankton community structure in a highly turbid environment (Charente estuary, France): Spatio-temporal patterns and environmental control. Estuarine, Coastal and Shelf Science 88 : 219-232

Ory P, Hartmann HJ, Jude F, Dupuy C, Del Amo Y, Catala P, Mornet F, Huet V, Jan B, Vincent D, Sautour B,Montanié H (2010) Pelagic food web patterns: Do they modulate virus and nanoflagellate effects on picoplankton during the phytoplankton spring bloom? Environmental Microbiology 12: 2755-2772

Pasquaud S., Pillet M., David V., Sautour B., Elie P.(2010) Determination of fish trophic levels in an estuarine system. Estuarine Coastal and Shelf Science, 86 p. 237 - p. 246

Pasquaud S, David V, Lobry J, Girardin M, Sautour B, Elie P (2010). Exploitation of trophic resources by fish under stressful estuarine conditions . Mar Ecol Prog Ser 400 : 207-219

Perkins RG, Lavaud J, Serodio J, Mouget J-L, Cartaxana P, Rosa P, Barille L, Brotas V, Jesus BM (2010) Vertical cell movement is a primary response of intertidal benthic biofilms to increasing light dose. Marine Ecology Progress Series 416:93-103.

Shamoun-Baranes J, Leyrer J, van Loon E, Bocher P, Robin F, Meunier F, Piersma T(2010) Stochastic atmospheric assistance and the use of emergency staging sites by migrants. Proc of the Royal Soc Biol
277: 1505-1511

Pierre G, Graber M, Orvain F, Dupuy C, Maugard T (2010). Biochemical characterization of extracellular polymeric substances extracted from an intertidal mudflat using a cation exchange resin. Biochemical Systematics and Ecology 38: 917–923

Poirier C., Sauriau P.-G., Chaumillon E., Bertin X., (2010). Influence of hydro-sedimentary factors on mollusc death assemblages in a temperate mixed tide-and-wave dominated coastal environment: implications for the fossil record. Cont. Shelf Res. 30: 1876-1890


Armynot du Chatelet E., Degré D., Sauriau P.-G., Debenay J.-P., (2009). Distribution of living benthic foraminifera in relation with environmental variables within the Aiguillon cove (Atlantic coast, France): improving knowledge for paleoecological interpretation. Bull. Soc. Geol. Fr., 180 (2): 93-104

Auguet JC, Montanié H, Hartmann HJ, Lebaron P, Casamayor E, Catala P, Delmas D (2009) Potential effect of freshwater virus on the structure and activity of bacterial communities in the Marennes-Oléron bay (France). Microbial ecology 57: 295-306

Baeta A, Pinto R, Valiela I, Richard P, Niquil N, Marques JC (2009) 15N and 13C in the Mondego estuary food web: seasonal variation in producers and consumers. Marine Environmental Research 67 : 109-116

Baeta A, Valiela I, Pinto R, Richard P, Niquil N, Marques JC (2009) Eutrophication and trophic structure in response to the presence of the eelgrass Zostera noltii. Mar. Biol. 156: 2107-2120

Bouchet VMP, Sauriau PG, Debenay JP, Mermillod-Blondin F, Schmidt S, Amiard JC, Dupas B (2009) Influence of the mode of macrofauna-mediated bioturbation on the vertical distribution of living benthic foraminifera: first insight from axial tomodensitometry. J. Exp. Mar. Biol. Ecol. 371 : 20-33

Callier MD, Fletcher RL, Thorp CH, Fichet D (2009) Macrobenthic community changes along a gradient of marina- related pollution at Southsea (South coast of England) and Minimes (West coast of France) marinas. J. mar. biol. assoc. UK. 89 : 19-29

Compton TJ, Troost TA, Drent J, Kraan C, Bocher P, Leyrer J, Dekinga A, Piersma T (2009) Repeatable sediment associations of burrowing bivalves acroos six european tidal flat systems Marine Ecology Progress Series 382: 87–98

Dang C, de Montaudouin X, Savoye N, Caill-Milly N, Martinez P, Sauriau PG (2009) Stable isotopes changes in the adductor muscle of diseased bivalve Ruditapes philippinarum. Mar. Biol. 156: 611-618

Dang C, Sauriau PG, Savoye N, Caill-Milly N, Martinez P, Haure J, Millaret C, de Montaudouin X (2009) Determination of diet in Manila clam Ruditapes philippinarum by spatial analysis of stable isotopes. Mar. Ecol. Prog. Ser. 387: 167-177

De Corte D, Yokokawa T, Varela MM, Agogué H, Herndl GJ (2009) Spatial distribution of Bacteria and Archaea and amoA gene copy numbers throughout the water column of the Eastern Mediterranean Sea. The ISME Journal 3:147-158

Dubois S, Savoye N, Sauriau PG, Billy I, Martinez P, de Montaudouin X (2009) Digenean trematodes – marine mollusc relationships: a stable isotope study. Dis. Aquat. Org. 84: 57-63

Johnson GA, Niquil N, Asmus H, Bacher C, Asmus R, Baird D (2009) The effects of aggregation on the performance of the inverse method and indicators of network analysis. Ecological Modelling 220 : 3448-3464

Lebreton B, Richard P, Radenac G, Bordes M, Bréret M, Arnaud C, Mornet F, Blanchard GF (2009) Are epiphytes a significant component of intertidal Zostera noltii beds ? Aquat. Bot. 91: 82-90

Lefebvre S, Marin Leal JC, Dubois S, Orvain F, Blin J-L, Bataillé M-P, Ourry A, Galois R (2009) Seasonal dynamics of trophic relationships among co-occurring suspension feeders in two shellfish culture dominated ecosystems. Estuarine, Coastal and Shelf Science 82 : 415-425

Leyrer J, Bocher P, Robin F, Delaporte P, Meunier F, Joyeux E, Piersma T (2009) Northward migration of Afro-Siberian Knots Calidris canutus canutus: High variability in Red Knots numbers visiting stopover sites on French Atlantic coast (1979-2009). Wader Study Group Bulletin 116: 145–151

Materna AC, Sturm S, Kroth PG, Lavaud J (2009) First induced plastid genome mutations in an alga with secondary plastids: psbA mutations in the diatom Phaeodactylum tricornutum (Bacillariophyceae) reveal consequences on the regulation of photosynthesis. Journal of Phycology 45: 838-846

Pascal PY, Dupuy C, Richard P, Mallet C, Armynot du Chatelet E, Niquil N (2009) Seasonal variation in consumption of benthic bacteria by meio- and macrofauna in an intertidal mudflat. Limnology and Oceanography 54: 1048-1059

Poirier C, Sauriau PG, Chaumillon E, Allard J (2009) Can molluscan assemblages give insights into Holocene environmental changes other than sea level rise? A case study from a macrotidal bay (Marennes-Oléron, France). Palaeogeography, Palaeoclimatology, Palaeoecology 280: 105-118

Quaintenne G, van Gils J A, Bocher P, Dekinga A, Piersma T (2009) Diet selection in a molluscivore shorebird across Western Europe: do they show short- or long-term intake rate-maximization? J Anim Ecol doi: 10.1111/j.1365-2656.2009.01608

Shamoun-Baranes J., Leyrer J., van Loon E., Bocher P., Robin F., Meunier F., Piersma T. (2009) Stochastic atmospheric assistance and the use of emergency staging sites by migrants. Proceedings of the Royal Society Series B. 277: 1505-1511


Allard J, Chaumillon E, Poirier C, Sauriau PG (2008) Evidence of former Holocene sea level in the Marennes-Oléron Bay (French Atlantic coast). C.R. Geosciences 340 : 306-314

Bachelet G, de Montaudouin X, Desclaux C, Mairesse G, Raigné H, Randriambao K, Garcia-Meunier P, Martel C, Pascal P-Y, Sauriau PG, Simon-Bouhet B, Robert S Geairon P, Goulletquer P, Grangeré K, Guilpain P, Le Moine O, Rossi N, Seugnet JL, Soletchnick P, Thouzeau G, Paulet Y.-M, Richard J, Chlous-Ducharme F, Capitaine B, Boncoeur J, Alban F, Frésard M, Viard F, Bernas D, Cariou T, Daguin C, Dupont L, Jollivet D, Kruse I, McGlashan D (2008) Les Mollusques invasifs des bassins conchylicoles du littoral Manche-Atlantique : diversité et structure génétiques des populations invasives, compétition avec les taxons indigènes, gestions du risque pour les écosystèmes et la conchyliculture. Actes du Colloque de restitution du «Programme de recherche INVASIONS BIOLOGIQUES», Ministère de l’Ecologie, du Développement et de l’Aménagement durables (Eds.) : 193-200

Blanchet H, Lavesque N, Ruellet T, Dauvin JC, Sauriau PG, Desroy N, Desclaux C, Leconte M, Bachelet G, Janson A-L, Bessineton C, Duhamel S, Jourde J, Mayot S, Simon S, de Montaudouin X (2008) Use of biotic indices in semi-enclosed coastal ecosystems and transitional waters habitats. Implications for the implementation of the European Water Framework Directive. Ecol. Indic 8: 360-372

Bouchet VMP, Sauriau P-G (2008) Influence of oyster culture practices and environmental conditions on the ecological status of intertidal mudflats in the Pertuis Charentais (SW France): a multi-index approach. Marine Pollution Bulletin 56: 1898-1912

Compton T., Troost T., van der Meer J, Kraan C, Honkoop P., Rogers D, Pearson G, de Goeij P, Bocher P, Lavaleye M, Leyrer J, Yates M, Dekinga A, Piersma T (2008) Distributional overlap rather than habitat differentiation
characterizes co-occurrence of bivalves in intertidal soft sediment systems. Mar Ecol Prog Ser 373: 25–35

Faucher K., Fichet D., Miramand P., Lagardère, J.-P., (2008). Impact of chronic cadmium exposure at environmental dose on escape behaviour in sea bass (Dicentrarchus labrax L.; Teleostei, Moronidae). Environmental pollution, vol. 151, no1 : 148-157

Herndl GJ, Agogué H., Baltar F., Reinthaler T., Sintes E., Varela M.M (2008) Regulation of aquatic microbial processes: the ‘microbial loop’ of the sunlit surface waters and the dark ocean dissected. Contribution to the SAME-10 Special Issue. Aquatic Microbial Ecology. 53 : 69-81

Lobry J, David V, Pasquaud S, Lepage M, Sautour B, Rochard E (2008) Diversity and stability of an estuarine trophic network. Marine Ecology Progress Series 358 : 13-25

Malet N, Sauriau P-G, Ryckaert M, Malestroit P, Guillou, G (2008) Dynamics and sources of suspended particulate organic matter in the Marennes-Oléron oyster farming bay: insights from stable isotopes and microalgae ecology. Est. Coast. Shelf Sci. 78 : 576-586

Obernosterer I, Catala P, Lami R, Caparros J, RasJ, Bricaud A, Dupuy C, van Wambeke F, Lebaron P (2008) Biochemical characteristics and bacterial community structure of the sea surface microlayer in the South Pacific Ocean. Biogeosciences 5: 693–705

Pascal P-Y, Dupuy C, Richard P, Niquil N (2008) Bacterivory in the common foraminifer Ammonia tepida: Isotope tracer experiment and the controlling factors. Journal of Experimental Marine Biology and Ecology 359 : 55-61

Pascal P.Y., Dupuy C., Richard P., Rzeznik-Orignac J., Niquil N (2008) Bacterivory of a mudflat nematode community according to biotic and abiotic factors. Marine Biology 154 :671-682

Pascal P-Y, Dupuy C, Mallet C, Richard P, Niquil N (2008) Bacterivory by benthic organism in sediment: quantification using 15N enriched bacteria. Journal of Experimental Marine Biology and Ecology 355: 18-26

Rzeznik-Orignac J, Richard P, Fichet D, Boucher G (2008) Food source and trophic position of intertidal nematodes and copepods unraveled by stable isotope analysis. Marine Ecology Progress Series 359: 145-150

Urios L, Agogué H, Intertaglia L, Lesongeur F, Lebaron P (2008) Melitea salexigens gen. nov., sp. nov., a member of the class Gammaproteobacteria from the Mediterranean Sea. International Journal of Systematic and Evolutionary Microbiology 58 : 2479-2483


Bocher P, Piersma T, Dekinga A, Kraan C, Yates M, Guyot T, Folmer E, Radenac G (2007) Site- and species- specific distribution patterns of molluscs at five intertidal soft-sediment areas in northwest Europe during a single winter. Marine Biology 151(2) : 401-484

Bouchet V, Debenay J-P Sauriau P-G (2007) First report of Quinqueloculina carinatastriata (Wiesner, 1923) (Foraminifera) along the French Atlantic coast (Marennes-Oléron Bay and Ile de Ré). Journal of Foraminiferal Research 37: 204-212

Bouchet V, Debenay J-P, Sauriau P-G, Radford-Knoery J Soletchnik P (2007) Effects of short-term environmental disturbances on living benthic foraminifera during the Pacific oyster summer mortality in the Marennes-Oléron Bay (France). Marine Environmental Research 64 : 358-383

Couturier CS, Rouault A, McKenzie D, Galois R, Robert S, Joassard L, Claireaux G (2007) Effects of water viscosity upon ventilation and metabolism of a flatfish, the common sole Solea solea (L.). Marine Biology 152 : 803-814

Dupuy C, Ryckaert M, Le Gall S, Hartmann H J (2007) Seasonal variations of planktonic communities in Atlantic Coastal pond: importance of nanoflagellates. Microbial Ecology 53: 537-548

Durieux EDH, Galois R, Bégout M-L, Sasal P, Lagardère F (2007) Temporal changes in lipid condition and parasitic infection by digenean metacercariae of young-of year common sole Solea solea (L.) in an Atlantic nursery ground (Bay of Biscay, France). Journal of Sea Research 57 : 162-170

Leguerrier D, Degré D, Niquil N (2007) Network analysis and inter-ecosystem comparison of two intertidal mudflat food webs (Brouage Mudflat and Aiguillon Cove, SW France). Estuarine, Coastal and Shelf Science 73 : 403-418

Malet N, Sauriau P-G, Faury N, Soletchnik P Guillou G (2007) Seasonality in trophic conditions and gametogenis, and d13C and d15N levels in diploid and triploid Pacific oysters Crassostrea gigas. Marine Ecology Progress Series 346 : 203-217

Marquis E, Niquil N, Delmas D, Hartmann HJ, Bonnet D, Carlotti F, Herbland A, Labry C, Sautour B, Laborde P, Dupuy C (2007) Planktonic food web dynamics related to phytoplankton bloom development on the continental shelf of the Bay of Biscay, French coast. Estuarine Coastal and Shelf Science 73 : 223-235

Orvain F, Sauriau P-G, Le Hir P, Guillou G, Cann Ph Paillard M (2007) Spatio-temporal variations in intertidal mudflat erodability: Marennes-Oléron Bay, western France. Continental Shelf Research 27 : 1153-1173

David V, Sautour B, Chardy P (2007) Successful colonization of the calanoid copepod Acartia tonsa in the oligomesohaline area of the Gironde estuary (SW France) Natural or anthropogenic forcing? Estuarine Coastal and Shelf Science 71 : 429-442

David V, Sautour B, Chardy P (2007) The paradox between the long-term decrease of egg mass size of the calanoid copepod Eurythemora affinis and its long-term constant abundance in a highly turbid estuary (Gironde estuary, France). Journal of plankton Research 29 : 377-389

Herlory O, Richard P, Blanchard G (2007) Methodology of light response curves: application of chlorophyll fluorescence to microphytobenthic biofilm. Marine Biology 153 : 91-101


Auguet JC, Montanié H, Lebaron P (2006) Structure of virioplankton in the Charente Estuary (France): transmission electron microscopy versus pulsed field gel electrophoresis. Microbial Ecology 51 : 197-208

Dalto AG, Gremare A, Dinet A, Fichet D (2006) Muddy-bottom meiofauna responses to heavy metal and organic enrichment in New-Caledonia south-West Lagoon. Estuarine, coastal and Shelf Science 67 : 629-644

Degré D, Leguerrier D, Armynot du Chatelet E, Rzeznik J, Auguet JC, Dupuy C, Marquis E, Fichet D, Struski C, Joyeux E, Sauriau PG, Niquil N (2006) Comparative analysis of the food webs of two intertidal mudflats during two seasons using inverse modelling: Aiguillon cove and Brouage mudflat, France. Estuarine, coastal and Shelf Science 69 : 107-124

Faucher K, Fichet D, Miramand P, Lagardère JP, (2006) Impact of acute cadmium exposure on the trunk lateral line neuromasts and consequences on the “C-start” response behaviour of the sea bass (Dicentrarchus labrax L.; Teleostei, Moronidae). Aquatic Toxicology, Volume 76, Issues 3-4 : 278-294

Jonsson P.R., van Duren L.A., Amielh M., Asmus R., Aspden R., Daunys D., Friedrichs M., Friend P.L., Olivier F., Pope, N., Precht E., Sauriau P.-G., Schaaff E., 2006. Making water flow: a comparison of the hydrodynamic characteristics of 12 different benthic biological flumes. Aquat. Ecol., 40: 409-438

Joux F, Agogué H, Obernosterer I, Dupuy C, Reinthaler T, Herndl G, Lebaron P (2006) Microbial community structure in the sea surface microlayer at two contrasting coastal sites in the northwestern Mediterranean Sea. Aquatic microbial Ecology 42 : 91-104

Legrand H, Herlory O, Guarini J-M, Blanchard GF, Richard P (2006) Inhibition of microphytobenthic photosynthesis by the herbicides atrazine and diuron. Cahiers de Biologie marine 47 : 39-45

Leguerrier D, Bacher C, Benoît E, Niquil N (2006) A probabilistic approach of flow-balanced network based on Markov chains. Ecological Modelling 193 : 295-314

Niquil N, Bartoli G, Urabe J, Jackson GA, Legendre L, Dupuy C, Kumagai M (2006) Carbon steady-state model of the planktonic food web of Lake Biwa, Japan . Freshwater Biology 51 : 1570-1585

Niquil N, Kerleguer G, Leguerrier D, Richard P, Legrand H, Dupuy C, Pascal PY, Bacher C (2006) How would the loss of production due to an herbicide have repercussions in the food web of an intertidal mudflat? Sensitivity analysis of an inverse model for Brouage mudflat, Marennes-Oléron Bay, France. Cahiers de Biologie marine 47 : 63-71

Orvain F, Sauriau P-G, Bacher C, Prineau M (2006) The influence of sediment cohesiveness on bioturbation effects due to Hydrobia ulvae on the initial erosion of intertidal sediments: a study combining flume and model approaches. Journal of Sea Research 55: 54-73

Pigeot J, Miramand P, Guyot T, Sauriau PG, Fichet D, Le Moine O, Huet V. (2006) Cadmium pathways in an exploited intertidal ecosystem with chronic cadmium inputs (Marennes-Oléron, Atlantic coast, France). Mar. Ecol. Prog. Ser., Vol. 307: 101–114.

Struski C, Bacher C (2006) Preliminary estimate of primary production by phytoplankton in Marennes-Oleron Bay, France. Estuarine, coastal and Shelf Science 66 : 323-334

Vigneron V, Solliec G, Montanié H, Renault T (2004) Detection of ostreid herpesvirus 1 (OsHV-1) DNA in seawater by PCR: influence of water parameters in bioassays. Diseases of aquatic Organisms 62 : 35-44

Jonsson PR, van Duren LA, Amielh M, Asmus R, Aspden R, Daunys D, Friedrichs M, Friend PL, Olivier F, Pope, N. Precht E, Sauriau P-G. Schaaff E (2006) Making water flow: a comparison of the hydrodynamic characteristics of 12 different benthic biological flumes. Aquatic Ecology 40: 409-438

Longphuirt SN, Leynaert A, Guarini J-M, Chauvaud L, Claquin P, Herlory O, Amicea E, Huonnica P, Ragueneau O (2006) Discovery of microphytobenthos migration in the subtidal zone. Marine Ecology Progress Series 328: 143-154

Rossignol L, Dupuy C, Pascal P-Y, Debenay JP (2006) Hydrobia ulvae: a cleaner of hard-shelled foraminifera. Journal of Foraminiferal Research 37: 8-11


Auguet JC, Montanié H, Delmas D, Hartmann HJ, Huet V (2005) Dynamic of virioplankton abundance and its environmental control in the Charente Estuary (France). Microbial Ecology 50 : 337-349

Armynot du Chatelet E., Debenay J.-P., Degré D., Sauriau P.-G., 2005. Utilisation des foraminifères benthiques comme indicateurs de paléo-niveaux marins ? Etude du cas de l’anse de l’Aiguillon. C. R. Palevol., 4 (1-2): 209-223

Chauvaud L, Lorrain A, Dumbar RB, Paulet YM, Touzeau G, Jean F, Guarini JM, Mucciaronne D (2005) Shell of the great scallop Pectem maximus as a high-frequency archive of paleoenvironmental changes. Geochemistry Geophysics Geosystems 6 : 1-15

Collos Y, Descolas-Gros C, Mornet F (2005) Grazing affects carbon fixation pathways by phytoplankton in coastal marine ecosystems. Chemistry and Ecology 21 : 503-509

Gohin F, Loyer S, Lunven M, Labry C, Froidefond JM, Delmas D, Huret M, Herbland A (2005) Satellite-derived parameters for biological modelling in coastal waters: illustration over the eastern continental shelf of the Bay of Biscay. Remote Sensing of Environment 95 : 29-46

Haubois A-G, Guarini JM, Richard P, Fichet D, Radenac G, Blanchard GF (2005) Ingestion rate of the deposit-feeder Hydrobia ulvae (Gastropoda) on epipelic diatoms: effect of cell size and algal biomass. Journal of experimental marine Biology and Ecology 317 : 1-12

Haubois AG, Sylvestre F, Guarini JM, Richard P, Blanchard GF (2005) Spatio-temporal structure of the epipelic diatom assemblage from an intertidal mudflat in Marennes-Oléron Bay, France. Estuarine, coastal and Shelf Science 64 : 385-394

Herlory O, Blanchard GF, Planche S, Huet V, Richard P (2005) Does the size of the microphytobenthic biofilm on intertidal mudflats depend on the available photosynthetic biomass?. Marine Ecology Progress Series 298 : 95-100

Labry C, Delmas D, Herbland H (2005) Phytoplankton and bacterial alkaline phosphatase activities in relation to phosphate and DOP availability within the Gironde plume waters (Bay of Biscay). Journal of experimental marine Biology and Ecology 318 : 213-225

Martin S, Clavier J, Guarini JM, Chauvaud L, Hily C, Grall J, Thouzeau G, Jean F, Richard J (2005) Comparison of Zostera marina and maerl community metabolism. Aquatic Botany 83 : 161-174

Sokolowski A, Richard P, Fichet D, Radenac G (2005) Cd transfer in the deposit-feeder Prosobranch Hydrobia ulvae (Pennant) from benthic diatoms: the kinetics of rapid Cd assimilation and efflux. Journal of experimental marine Biology and Ecology 317 : 159-174


Agogué H. Casamayor EO, Joux F, Obemosterer I, Dupuy C, Lantoine F, Catala P, Weinbauer MG, Reinthaler T, Herndl GJ, Lebaron P (2004) Comparison of samplers for the biological characterization of the sea surface microlayer. Limnology and Oceanography Methods 2 : 213-225

Audemard C., Sajus M.-C., Barnaud A., Sautour B., Sauriau P.-G., Berthe F.J.C., 2004. Infection dynamics of Marteilia refringens in flat oyster Ostrea edulis and copepod Paracartia grani in a claire pond of Marennes-Oléron Bay. Dis. Aquat. Org., 61: 103-111

Bachelet G., Simon-Bouhet B., Desclaux C., Garcia-Meunier P., Mairesse G., de Montaudouin X., Raigné H., Randriambao K., Sauriau P.-G., Viard F., 2004. Invasion of the eastern Bay of Bis-cay by the nassariid gastropod Cyclope neritea: origin and effects on resident fauna. Mar. Ecol. Prog. Ser., 276: 147-159

Guarini J-M, Gros P, Blanchard GF, Richard P, Fillon A (2004) Benthic contribution to pelagic microalgal communities in two semi-enclosed, european-type littoral ecosystems (Marennes-Oléron Bay and Aiguillon Bay, France). Journal of Sea Research 52 : 241-258

Herlory O, Guarini JM, Richard P, Blanchard GF (2004) Microstructure of microphytobenthic biofilm and its spatio-temporal dynamics in an intertidal mudflat (Aiguillon Bay, France). Marine Ecology Progress Series 282 : 33-44

Hust J., Frydenberg J., Sauriau P.-G., Le Gall P., Mouritsen K.N, Jensen K.T., 2004. Use of ITS rDNA for discriminating of larval stages of two microphallid (Digenea) species using Hydrobia ulvae (Pennant, 1777) and Corophium volutator (Pallas, 1766) as intermediate hosts. Parasitol. Res., 93 (4): 304-310

Radenac G, Coteur G, Danis B, Dubois P, Warnau M (2004) Measurement of EROD activity: Caution on spectral properties of standards used. Marine Biotechnology 6 : 307-311

Rzeznik-Orignac J, Fichet D, Boucher G (2004) Extracting massive numbers of nematodes from muddy marine deposits: efficiency and selectivity. Nematology 6 (part 4) : 605-616

Martel C, Guarini JM, Blanchard G, Sauriau PG, Trichet C, Robert S, Garcia-Meunier P (2004) Invasion by the marine gastropod Ocinebrellus inornatus in France. III. Comparison of biological traits with the resident species, Ocenebra erinacea. Marine Biology 146 : 93-102

Orvain F., Sauriau P.-G., Sygut, A., Joassard, L., Le Hir P., 2004. Interacting effects of Hydrobia ulvae bioturbation and microphytobenthos on the erodability of mudflat sediments. Mar. Ecol. Prog. Ser., 278: 205-223

publie le Wednesday 22 June 2016