Publications
2020
Saltaji, S., Rué, O., Sopena, V., Sablé, S., Tambadou, F., Didelot, S., Chevrot, R., 2020, Lactococcus lactis Diversity Revealed by Targeted Amplicon Sequencing of purR Gene, Metabolic Comparisons and Antimicrobial Properties in an Undefined Mixed Starter Culture Used for Soft-Cheese Manufacture, Foods, pp. 622.
2019
Pante, E., Becquet, V., Viricel, A., Garcia, P., 2019,Investigation of the molecular signatures of selection on ATP synthase genes in the marine bivalve Limecola balthica, Aquatic Living Resources, pp. 3.
2018
Breitwieser, M., Becquet, V., Thomas-Guyon, H., Pillet, V., Sauriau, P.-G.,
Graber, M., Viricel, A., 2018, Population structure and genetic diversity in
the variegated scallop, Mimachlamys varia (Linnaeus, 1758), a novel
bioindicator of chemical pollution on the French coastline, Journal of Molluscan Studies, pp. 417-425.
Hugoni, M., Escalas, A., Bernard, C., Nicolas, S., Jézéquel, D., Vazzoler, F.,
Sarazin, G., Leboulanger, C., Bouvy, M., Got, P., Ader, M., Troussellier, M.,
Agogué, H., 2018, Spatiotemporal variations in microbial diversity across the three domains of life in a tropical thalassohaline lake (Dziani Dzaha, Mayotte Island), Molecular Ecology, pp. 4775-4786.
Lavergne C., Hugoni M., Dupuy C., and Agogué H. (2018). First evidence of the presence and activity of archaeal C3 group members in an Atlantic intertidal mudflat. Scientific Reports, 8, 11790
Lavergne, C., Hugoni M., Hubas C., Debroas D., Dupuy, C., and Agogué, H. (2018). Diel Rhythm Does Not Shape the Vertical Distribution of Bacterial and Archaeal 16S rRNA Transcript Diversity in Intertidal Sediments : a Mesocosm Study. Microbial Ecology. 75, 364-374
Louis, M., Simon-Bouhet, B., Viricel, A., Lucas, T., Gally, F., Cherel, Y.,
Guinet, C., 2018, Evaluating the influence of ecology, sex and kinship on the
social structure of resident coastal bottlenose dolphins, Marine Biology, pp. 80.
Salsano, C., Didelot, S., Tambadou, F., Caradec, T., Sopena, V., Barthélémy, C., Thiery, V., Chevrot, R., 2018, Complete Genome Sequence of the Polymyxin E (Colistin)-Producing Paenibacillus sp. Strain B-LR”,”Génome complet du Paenibacillus B-LR producteur de colistine, Microbiology Resource Announcements.
Torres, L., Welch, A., Zanchetta, C., Chesser, R., Manno, M., Donnadieu, C.,
Bretagnolle, V., Pante, E., 2018, Evidence for a duplicated mitochondrial region in Audubon’s shearwater based on MinION sequencing, Mitochondrial DNA Part A, pp. 256-263.
Viricel A, Becquet V, Dubillot E, Pante E (2018) De novo assembly and functional annotation of the transcriptome of Mimachlamys varia, a bioindicator marine bivalve. Marine Genomics
2017
Breitwieser, M., Viricel, A., Churlaud, C., Guillot, B., Martin, E., Stenger, P.-L.,
Huet, V., Fontanaud, A., Thomas-Guyon, H., 2017, First data on three bivalve species exposed to an intra-harbour polymetallic contamination (La Rochelle, France), Comparative Biochemistry and Physiology - Part C : Comparative Pharmacology and Toxicology, pp. 28 - 37.
Jauffrais, T., Agogué, H., Gemin, M−P., Beaugeard, L., Martin−Jézéquel, V. 2017. Effect of bacteria on growth and biochemical composition of two benthic diatoms Halamphora coffeaeformis and Entomoneis paludosa. Journal of Experimental Marine Biology and Ecology. 495:65−74.
Lavergne C , Agogué H, Leynaert A, Raimonet M, De Wit R, Pineau P, Bréret M, Lachaussée N, Dupuy C (2017) Factors influencing prokaryotes in an intertidal mudflat and the resulting depth gradients. Estuarine, Coastal and Shelf Science, Elsevier, 189, pp.74 - 83. 〈10.1016/j.ecss.2017.03.008〉
Leboulanger C, Agogué H, Bernard C, Bouvy M, Carré C, Cellamare M, Duval C, Fouilland E, Got P, Intertaglia L, Lavergne C, Le Floc’H E, Roques C, Sarazin G (2017) Microbial Diversity and Cyanobacterial Production in Dziani Dzaha Crater Lake, a Unique Tropical Thalassohaline Environment. PLoS ONE, Public Library of Science, 2017, 12 (1), pp.e0168879.〈10.1371/journal.pone.0168879〉
Moncaleano-Nino A, Barrios-Latorre S, Poloche-Hernandez J, Becquet V, Huet V, Villamil L, Thomas-Guyon H, Ahrens M, Luna-Acosta A (2017) Alterations of tissue metallothionein and vitellogenin concentrations in tropical cup oysters (Saccostrea sp.) following short-term (96h) exposure to cadmium. Aquatic Toxicology, doi:10.1016/j.aquatox.2017.02.011.
Pante E, Poitrimol C, Saunier A, Becquet V, Garcia P (2017) Putative sex-linked heteroplasmy in the tellinid bivalve Limecola balthica (Linnaeus, 1758). Journal of Molluscan Studies 83 (1) . doi :/10.1093/mollus/eyw038
2016
Breitwieser M*,Viricel A*, Graber M, Murillo L, Becquet V, Churlaud C, Fruitier-Arnaudin I, Huet V, Lacroix C, Pante E, Le Floch S, Thomas-Guyon H (2016) Short-term and long-term biological effects of chronic chemical contamination on natural populations of a marine bivalve. PLoS ONE 11(3):e0150184. doi : 10.1371/journal.pone.0150184 (* equal contribution).
Dessier, A., Dupuy, C., Trancart, T., Audras, A., Bustamante, P., Gérard, C., 2016. Low diversity of helminth parasites in Sardina pilchardus and Engraulis encrasicolus (Clupeidae) from the Bay of Biscay. Marine and Freshwater Research,.
Viricel, A., Simon-Bouhet, B., Ceyrac, L., Dulau-Drouot, V., Berggren, P.,
Amir, O., Jiddawi, N., Mongin, P., Kiszka, J., 2016, Habitat availability and
geographic isolation as potential drivers of population structure in an oceanic dolphin in the Southwest Indian Ocean, Marine Biology.
2015
Ben Henda, Y., Laamari, M., Lanneluc, I., Travers, M.A., Agogué, H., Arnaudin, I., Bridiau, N., Maugard, T., Piot, J.M., Sannier, F., Bordenave-Juchereau, S., 2015. Di and tripeptides from marine sources can target adipogenic process and contribute to decrease adipocyte number and functions. Journal of Functional Foods 17, 1-10.
Hugoni, M., Agogué, H., Taib, N., Domaizon, I., Moné, A., Galand, P., Bronner, G., Debroas, D., Mary, I., 2015. Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea. Microbial Ecology 70, 473-483.
Lanneluc, I., Langumier, M., Sabot, R., Jeannin, M., Refait, P., Sablé, S., 2015. On the bacterial communities associated with the corrosion product layer during the early stages of marine corrosion of carbon steel. International Biodeterioration and Biodegradation 99, 55-65.
Louis, M., Gally, F., Barbraud, C., Béesau, J., Tixier, P., Simon-Bouhet, B.,
Le Rest, K., Guinet, C., 2015, Social structure and abundance of coastal bottlenose dolphins, Tursiops truncatus, in the Normano-Breton Gulf, English Channel, Journal of Mammalogy, pp. 481-493.
Pante, E., Abdelkrim, J., Viricel, A., Gey, D., France, S., Boisselier, M.-C.,
Samadi, S., 2015, Use of RAD sequencing for delimiting species, Heredity, pp. 450–459.
Pante, E., France, S., Gey, D., Cruaud, C., Samadi, S., 2015, An inter-ocean
comparison of coral endemism on seamounts : the case of Chrysogorgia, Journal of Biogeography, pp. 1907–1918.
Pante E, Pascal PY, Becquet V, Viricel A, Simon-Bouhet B, Garcia P (2015) https://hal.archives-ouvertes.fr/hal-01064464
Sabatier E, Pante E, Dussud C, Van Canneyt O, Simon-Bouhet B, Viricel A (2015) Genetic monitoring of pilot whales, Globicephala spp. (Cetacea : Delphinidae), stranded on French coasts. Mammalia 79(1) : 111-114
Yang, A., Zhang, X., Agogué, H., Dupuy, C., Gong, J., 2015, Contrasting spatiotemporal patterns and environmental drivers of diversity and community structure of ammonia oxidizers, denitrifiers, and anammox bacteria in sediments of estuarine tidal flats, Annals of Microbiology, pp.
2014
Agogué, H., Mallet, C., Orvain, F., De Crignis, M., Mornet, F., Dupuy, C., 2014. Bacterial dynamics in a microphytobenthic biofilm : A tidal mesocosm approach. Journal of Sea Research 92, 36-45.
Mallet, C., Agogué, H., Bonnemoy, F., Guizien, K., Orvain, F., Dupuy, C., 2014. Structures of benthic prokaryotic communities and their hydrolytic enzyme activities resuspended from samples of intertidal mudflats : An experimental approach. Journal of Sea Research 92, 158-169.
Zhang, X., Agogué, H., Dupuy, C., Gong, J., 2014. Relative Abundance of Ammonia Oxidizers, Denitrifiers, and Anammox Bacteria in Sediments of Hyper-nutrified Estuarine Tidal Flats and in Relation to Environmental Conditions. CLEAN – Soil, Air, Water 42, 815-823.
Saunier A, Garcia P, Becquet V, Marsaud N, Escudié F, Pante E (2014) Mitochondrial genomes of the Baltic clam Macoma balthica (Bivalvia : Tellinidae) : setting the stage for studying mito-nuclear incompatibilities. BMC Evolutionary Biology 14:259
Viricel A, Pante E, Dabin W, Simon-Bouhet B (2014) Applicability of RAD-tag genotyping for inter-familial comparisons : empirical data from two cetaceans. Molecular Ecology Resources 14(3) : 597-605
2013
Kientz, B., Agogué, H., Lavergne, C., Marié, P., Rosenfeld, E., 2013. Isolation and distribution of iridescent Cellulophaga and other iridescent marine bacteria from the Charente-Maritime coast, French Atlantic. Systematic and Applied Microbiology 36, 244-251
Lavaud, J., Lepetit, B., 2013. An explanation for the inter-species variability of the photoprotective non-photochemical chlorophyll fluorescence quenching in diatoms. Biochimica et Biophysica Acta - Bioenergetics 1827, 294-302.
Lepetit, B., Sturm, S., Rogato, A., Gruber, A., Sachse, M., Falciatore, A., Kroth, P.G., Lavaud, J., 2013. High light acclimation in the secondary plastids containing diatom phaeodactylum tricornutum is triggered by the redox state of the plastoquinone pool. Plant Physiology 161, 853-865.
Becquet V, Lasota R, Pante E, Sokolowski A, Wolowicz M, Garcia P (2013) Effects of fine-scale environmental heterogeneity on local genetic structure in Macoma balthica from the Gulf of Gdañsk (southern Baltic Sea). Hydrobiologia 714(1) : 61-70
2012
Lucia, M., Bocher, P., Cosson, R.P., Churlaud, C., Bustamante, P., 2012. Evidence of species-specific detoxification processes for trace elements in shorebirds. Ecotoxicology 21, 2349-2362.
Lucia, M., Bocher, P., Cosson, R.P., Churlaud, C., Robin, F., Bustamante, P., 2012. Insight on trace element detoxification in the Black-tailed Godwit (Limosa limosa) through genetic, enzymatic and metallothionein analyses. Science of the Total Environment 423, 73-83.
Becquet, V., Simon-Bouhet, B., Pante, E., Hummel, H., Garcia, P (2012) Glacial refugium versus range limit : Conservation genetics of Macoma Balthica, a key species in the Bay of Biscay (France) Journal of Experimental Marine Biology and Ecology, 432-433, pp. 73-82.
Pante E∗, Rohfritsch A∗, Becquet V, Belkhir K, Bierne N, Garcia P (2012) SNP detection from De Novo transcriptome Sequencing in the Bivalve Macoma balthica : marker development for evolutionary studies. PLoS ONE 7(12) art. no. e52302. IF=3.2 doi:10.1371/journal.pone.0052302 (∗authors contributed equally to the work)
Spitz J., Trites A.W., Becquet V., Brind’Amour A., Cherel Y., Galois R. & Ridoux V. (2012) Cost of living dictates what whales, dolphins and porpoises eat : the importance of prey quality on predator foraging strategies. PLoS ONE, 7(11) : e50096.